PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g034650.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 247aa    MW: 28320.4 Da    PI: 7.5052
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g034650.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.43e-1453104155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +r++h e+Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++++L+
  Sopen09g034650.1  53 QRMTHIEVERNRRKQMNEHLHVLRSLMPSS---YVQRGDQASIVGGAIEFVRELE 104
                       79****************************...9*****************9995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.7E-1451107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.85E-1251108No hitNo description
PROSITE profilePS5088815.31352103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.11E-1652118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-1153104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-1058109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550211.29E-5176240No hitNo description
CDDcd048730.00745176240No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MVNIDEEKAL MVSQKEEEIN VTFVGENSKG NESKKKRKRT KIRMKSSEEV ENQRMTHIEV  60
ERNRRKQMNE HLHVLRSLMP SSYVQRGDQA SIVGGAIEFV RELEQLLQCL ESQKRRKLYG  120
DNHQDSSLLM EIQNPSNNLV YAPNNNEIGI IQEDIAEIKS CLADVEVKII GIDNAMIKIL  180
SKRRPGQLIN TISALQDLQL NIIHTNVTTI EQTVLYTFNV KICGETRFSA DNIANLVQQI  240
FSFFSCK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13439KKRKRT
25364RMTHIEVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004247954.20.0PREDICTED: transcription factor FAMA isoform X2
RefseqXP_015086616.11e-180PREDICTED: transcription factor FAMA
SwissprotQ56YJ88e-94FAMA_ARATH; Transcription factor FAMA
TrEMBLK4CWK20.0K4CWK2_SOLLC; Uncharacterized protein
STRINGSolyc09g091760.1.11e-180(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46572341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.15e-81bHLH family protein